FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index6_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 22902433 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 50 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 5059715 | 2.5904734 | 5.408681 | 1 |
| CCTGG | 5073675 | 2.5848556 | 6.1452966 | 1 |
| CTTCT | 4989750 | 2.5650177 | 5.430183 | 1 |
| CTGGA | 4769635 | 2.477924 | 8.387785 | 1 |
| TCCAG | 4656085 | 2.3945444 | 5.584927 | 2 |
| CTCCT | 4606675 | 2.3337228 | 6.988803 | 1 |
| CTGGG | 4398430 | 2.2636654 | 8.031948 | 1 |
| CAGGA | 4327215 | 2.2591794 | 5.3246446 | 1 |
| CTTCA | 4273305 | 2.2075717 | 5.3904305 | 1 |
| CTCCA | 4319680 | 2.1991389 | 7.342767 | 1 |
| CCCAG | 4276475 | 2.1673949 | 6.9475274 | 1 |
| CTCTG | 4016680 | 2.0555584 | 6.245497 | 1 |
| CTGAA | 3549575 | 1.8615193 | 5.365544 | 1 |
| CTCAG | 3410210 | 1.7538123 | 5.572196 | 1 |